.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (NA12878_c_0003_gDNA_0002_A237FLHLT3_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/892f620f48ae01afbb9405e181fb64/.command.sh
Size: 311 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (NA12878_c_0003_gDNA_0002_A237FLHLT3_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    NA12878_c_0003_gDNA_0002_A237FLHLT3_1 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    NA12878_c_0003_gDNA_0002_A237FLHLT3_1_probe_sample.parquet