Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/d03b578e25999b1cf8c227a4071696/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/17e6139dc3a1e9ab3b257a8c0e12f0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/17e6139dc3a1e9ab3b257a8c0e12f0/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-mlojyxwf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:48:05,252 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:48:06,067 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:48:06,241 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:48:29,394 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:48:29,491 - cnv_pipe.batch.run_model - INFO - Processing cluster 103 with 191 probes
2026-06-03 04:48:30,075 - cnv_pipe.batch.run_model.cluster103 - INFO - Child process started for cluster 103 with 191 probes
2026-06-03 04:52:05,503 - cnv_pipe.batch.run_model.cluster103 - INFO - Child process finished cluster 103. Wrote cluster_103_samples.csv and cluster_103_params.csv
2026-06-03 04:52:05,506 - cnv_pipe.batch.run_model - INFO - Cluster 103 finished in 216.01 seconds. Status: SUCCESS