Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/d03b578e25999b1cf8c227a4071696/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/163913b9d2ebe6e3a0aad84d1dcd54/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/163913b9d2ebe6e3a0aad84d1dcd54/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-jfndikrt because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:51:29,880 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:51:30,834 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:51:31,028 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:51:55,078 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:51:55,359 - cnv_pipe.batch.run_model - INFO - Processing cluster 1147 with 180 probes
2026-06-03 04:51:55,773 - cnv_pipe.batch.run_model.cluster1147 - INFO - Child process started for cluster 1147 with 180 probes
2026-06-03 04:55:17,214 - cnv_pipe.batch.run_model.cluster1147 - INFO - Child process finished cluster 1147. Wrote cluster_1147_samples.csv and cluster_1147_params.csv
2026-06-03 04:55:17,217 - cnv_pipe.batch.run_model - INFO - Cluster 1147 finished in 201.86 seconds. Status: SUCCESS