Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/a29eebd4a40aa7c28dccf84364dc42/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/a29eebd4a40aa7c28dccf84364dc42/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/5144ad9e68402ab9f76dba7152c49a/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/a29eebd4a40aa7c28dccf84364dc42/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/45eb704bd2e1f473cd4c8377404406/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/45eb704bd2e1f473cd4c8377404406/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bibv9h0g because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:45:04,530 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:45:05,319 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:45:05,486 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:45:20,622 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-03 04:45:20,858 - cnv_pipe.batch.run_model - INFO - Processing cluster 1018 with 170 probes
2026-06-03 04:45:21,242 - cnv_pipe.batch.run_model.cluster1018 - INFO - Child process started for cluster 1018 with 170 probes
2026-06-03 04:48:32,460 - cnv_pipe.batch.run_model.cluster1018 - INFO - Child process finished cluster 1018. Wrote cluster_1018_samples.csv and cluster_1018_params.csv
2026-06-03 04:48:32,463 - cnv_pipe.batch.run_model - INFO - Cluster 1018 finished in 191.61 seconds. Status: SUCCESS