File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/809acfa57bdec908eedd8f4d647cb7/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9s2pu0kf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:43:00,830 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:43:01,617 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:43:01,797 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:43:17,598 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-03 04:43:17,815 - cnv_pipe.batch.run_model - INFO - Processing cluster 902 with 200 probes
2026-06-03 04:43:18,189 - cnv_pipe.batch.run_model.cluster902 - INFO - Child process started for cluster 902 with 200 probes
2026-06-03 04:46:47,805 - cnv_pipe.batch.run_model.cluster902 - INFO - Child process finished cluster 902. Wrote cluster_902_samples.csv and cluster_902_params.csv
2026-06-03 04:46:47,808 - cnv_pipe.batch.run_model - INFO - Cluster 902 finished in 209.99 seconds. Status: SUCCESS