Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/a29eebd4a40aa7c28dccf84364dc42/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/a29eebd4a40aa7c28dccf84364dc42/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/5144ad9e68402ab9f76dba7152c49a/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/a29eebd4a40aa7c28dccf84364dc42/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/85d0fc2f53df4d8ae34bf751dd3414/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/85d0fc2f53df4d8ae34bf751dd3414/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-x6aj9lf2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:45:16,102 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:45:16,907 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:45:17,078 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:45:33,076 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-03 04:45:33,291 - cnv_pipe.batch.run_model - INFO - Processing cluster 1150 with 200 probes
2026-06-03 04:45:33,676 - cnv_pipe.batch.run_model.cluster1150 - INFO - Child process started for cluster 1150 with 200 probes
2026-06-03 04:49:10,554 - cnv_pipe.batch.run_model.cluster1150 - INFO - Child process finished cluster 1150. Wrote cluster_1150_samples.csv and cluster_1150_params.csv
2026-06-03 04:49:10,557 - cnv_pipe.batch.run_model - INFO - Cluster 1150 finished in 217.27 seconds. Status: SUCCESS