File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/d4ce8dcb100274a0b52c187095473f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-sx225oek because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:52:42,611 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:52:43,594 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:52:43,801 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:53:01,145 - cnv_pipe.batch.run_model - INFO - Loaded data with 65 samples
2026-06-03 04:53:01,413 - cnv_pipe.batch.run_model - INFO - Processing cluster 844 with 200 probes
2026-06-03 04:53:01,891 - cnv_pipe.batch.run_model.cluster844 - INFO - Child process started for cluster 844 with 200 probes
2026-06-03 04:56:34,377 - cnv_pipe.batch.run_model.cluster844 - INFO - Child process finished cluster 844. Wrote cluster_844_samples.csv and cluster_844_params.csv
2026-06-03 04:56:34,382 - cnv_pipe.batch.run_model - INFO - Cluster 844 finished in 212.97 seconds. Status: SUCCESS