.command.sh - Workdir - GERMLINE_CNV:ModelSingle (96)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/e58e77c4b3786e5ed1f0518662e8ff/.command.sh
Size: 407 bytes
Task: GERMLINE_CNV:ModelSingle (96)
Attempt

Content

#!/bin/bash -Ceuo pipefail
export OMP_NUM_THREADS=8
export OPENBLAS_NUM_THREADS=8
export MKL_NUM_THREADS=8
export XLA_FLAGS="--xla_cpu_multi_thread_eigen=false"
cnv_pipe model-single-cluster \
    96 \
    clustered_panel.csv \
    counts_1.parquet \
    sample_metrics_1.parquet \
    ploidy_1.parquet \
    ./ \
    --num-steps-svi 7500 \
    --num-steps-full-svi 15000 \
    --num-posterior-samples 5000