mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-1om75zpr because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:50:45,268 - cnv_pipe.cnv_pipe.batch.agg - INFO - Aggregating data for sample NA12878_c_0001_gDNA_0001_235YY7LT3_1
2026-06-03 06:50:45,276 - cnv_pipe.cnv_pipe.batch.agg - INFO - Found 2659 clusters in clusters/
2026-06-03 06:51:27,088 - cnv_pipe.cnv_pipe.batch.agg - INFO - Read model data: 462994 probe-sample rows from 2659 clusters
2026-06-03 06:51:32,137 - cnv_pipe.cnv_pipe.batch.agg - INFO - Read counts: 462994 rows for sample NA12878_c_0001_gDNA_0001_235YY7LT3_1
2026-06-03 06:51:32,634 - cnv_pipe.cnv_pipe.batch.agg - INFO - Ploidy (sex=ProcessBatch, auto=posteriors): {'chrX': 1, 'chrY': 0, 'chr1': 4, 'chr10': 4, 'chr11': 4, 'chr12': 4, 'chr13': 1, 'chr14': 4, 'chr15': 4, 'chr16': 4, 'chr17': 4, 'chr18': 1, 'chr19': 4, 'chr2': 1, 'chr20': 4, 'chr21': 4, 'chr22': 4, 'chr3': 1, 'chr4': 1, 'chr5': 1, 'chr6': 1, 'chr7': 4, 'chr8': 1, 'chr9': 4}
2026-06-03 06:51:33,340 - cnv_pipe.cnv_pipe.batch.agg - INFO - Wrote 462994 rows to NA12878_c_0001_gDNA_0001_235YY7LT3_1_probe_sample.parquet