File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/bd5d3f65f2fc7d4cda741d87cfddf2/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-r_ceg7p4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:53:36,001 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:53:36,985 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:53:37,183 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:53:54,312 - cnv_pipe.batch.run_model - INFO - Loaded data with 65 samples
2026-06-03 04:53:54,413 - cnv_pipe.batch.run_model - INFO - Processing cluster 1137 with 199 probes
2026-06-03 04:53:55,001 - cnv_pipe.batch.run_model.cluster1137 - INFO - Child process started for cluster 1137 with 199 probes
2026-06-03 04:57:24,554 - cnv_pipe.batch.run_model.cluster1137 - INFO - Child process finished cluster 1137. Wrote cluster_1137_samples.csv and cluster_1137_params.csv
2026-06-03 04:57:24,557 - cnv_pipe.batch.run_model - INFO - Cluster 1137 finished in 210.14 seconds. Status: SUCCESS