File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/17c4a47ab2b96613691cb1a751eec6/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ijcub_od because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:53:06,483 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:53:07,390 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:53:07,567 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:53:24,214 - cnv_pipe.batch.run_model - INFO - Loaded data with 65 samples
2026-06-03 04:53:24,300 - cnv_pipe.batch.run_model - INFO - Processing cluster 983 with 148 probes
2026-06-03 04:53:24,717 - cnv_pipe.batch.run_model.cluster983 - INFO - Child process started for cluster 983 with 148 probes
2026-06-03 04:56:12,928 - cnv_pipe.batch.run_model.cluster983 - INFO - Child process finished cluster 983. Wrote cluster_983_samples.csv and cluster_983_params.csv
2026-06-03 04:56:12,930 - cnv_pipe.batch.run_model - INFO - Cluster 983 finished in 168.63 seconds. Status: SUCCESS