mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-780av5uf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:50:27,545 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:50:28,398 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:50:28,574 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:50:43,589 - cnv_pipe.batch.run_model - INFO - Loaded data with 65 samples
2026-06-03 04:50:43,788 - cnv_pipe.batch.run_model - INFO - Processing cluster 90 with 181 probes
2026-06-03 04:50:44,192 - cnv_pipe.batch.run_model.cluster90 - INFO - Child process started for cluster 90 with 181 probes
2026-06-03 04:53:49,194 - cnv_pipe.batch.run_model.cluster90 - INFO - Child process finished cluster 90. Wrote cluster_90_samples.csv and cluster_90_params.csv
2026-06-03 04:53:49,196 - cnv_pipe.batch.run_model - INFO - Cluster 90 finished in 185.41 seconds. Status: SUCCESS