mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-63acns9v because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:53:04,775 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:53:05,804 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:53:05,998 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:53:23,635 - cnv_pipe.batch.run_model - INFO - Loaded data with 65 samples
2026-06-03 04:53:23,922 - cnv_pipe.batch.run_model - INFO - Processing cluster 968 with 147 probes
2026-06-03 04:53:24,373 - cnv_pipe.batch.run_model.cluster968 - INFO - Child process started for cluster 968 with 147 probes
2026-06-03 04:56:06,888 - cnv_pipe.batch.run_model.cluster968 - INFO - Child process finished cluster 968. Wrote cluster_968_samples.csv and cluster_968_params.csv
2026-06-03 04:56:06,891 - cnv_pipe.batch.run_model - INFO - Cluster 968 finished in 162.97 seconds. Status: SUCCESS