.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (869_UPJ-N1-BDNA-1_B2377KTLT3_3)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/e03bd7838df501bc80cdb4d393e29b/.command.sh
Size: 297 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (869_UPJ-N1-BDNA-1_B2377KTLT3_3)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    869_UPJ-N1-BDNA-1_B2377KTLT3_3 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    869_UPJ-N1-BDNA-1_B2377KTLT3_3_probe_sample.parquet