File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/d490ca3ad6ac54ba3e4ac98e709291/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-28u6bu45 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:53:26,667 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:53:27,550 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:53:27,740 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:53:43,968 - cnv_pipe.batch.run_model - INFO - Loaded data with 65 samples
2026-06-03 04:53:44,202 - cnv_pipe.batch.run_model - INFO - Processing cluster 1091 with 188 probes
2026-06-03 04:53:44,611 - cnv_pipe.batch.run_model.cluster1091 - INFO - Child process started for cluster 1091 with 188 probes
2026-06-03 04:57:00,892 - cnv_pipe.batch.run_model.cluster1091 - INFO - Child process finished cluster 1091. Wrote cluster_1091_samples.csv and cluster_1091_params.csv
2026-06-03 04:57:00,895 - cnv_pipe.batch.run_model - INFO - Cluster 1091 finished in 196.69 seconds. Status: SUCCESS