mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-oechwui6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:52:49,161 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:52:50,283 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:52:50,499 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:53:08,573 - cnv_pipe.batch.run_model - INFO - Loaded data with 65 samples
2026-06-03 04:53:08,667 - cnv_pipe.batch.run_model - INFO - Processing cluster 875 with 194 probes
2026-06-03 04:53:09,213 - cnv_pipe.batch.run_model.cluster875 - INFO - Child process started for cluster 875 with 194 probes
2026-06-03 04:56:25,002 - cnv_pipe.batch.run_model.cluster875 - INFO - Child process finished cluster 875. Wrote cluster_875_samples.csv and cluster_875_params.csv
2026-06-03 04:56:25,005 - cnv_pipe.batch.run_model - INFO - Cluster 875 finished in 196.34 seconds. Status: SUCCESS