mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-itsaleat because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:28:43,028 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:28:43,820 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:28:43,985 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:29:27,534 - cnv_pipe.batch.run_model - INFO - Loaded data with 185 samples
2026-06-03 05:29:27,754 - cnv_pipe.batch.run_model - INFO - Processing cluster 768 with 183 probes
2026-06-03 05:29:28,164 - cnv_pipe.batch.run_model.cluster768 - INFO - Child process started for cluster 768 with 183 probes
2026-06-03 05:34:48,012 - cnv_pipe.batch.run_model.cluster768 - INFO - Child process finished cluster 768. Wrote cluster_768_samples.csv and cluster_768_params.csv
2026-06-03 05:34:48,015 - cnv_pipe.batch.run_model - INFO - Cluster 768 finished in 320.26 seconds. Status: SUCCESS