.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (gDNA_TMB_26_WT_02_gDNA_01_B23H3TCLT3_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/3fc3ea514e666234f1d9ac6804c794/.command.sh
Size: 313 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (gDNA_TMB_26_WT_02_gDNA_01_B23H3TCLT3_2)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    gDNA_TMB_26_WT_02_gDNA_01_B23H3TCLT3_2 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    gDNA_TMB_26_WT_02_gDNA_01_B23H3TCLT3_2_probe_sample.parquet