File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/5e7699812d4adbe03abf4b72ba0e67/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_i06exfq because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:28:27,317 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:28:28,233 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:28:28,413 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:29:11,639 - cnv_pipe.batch.run_model - INFO - Loaded data with 185 samples
2026-06-03 05:29:11,740 - cnv_pipe.batch.run_model - INFO - Processing cluster 702 with 113 probes
2026-06-03 05:29:12,290 - cnv_pipe.batch.run_model.cluster702 - INFO - Child process started for cluster 702 with 113 probes
2026-06-03 05:32:53,348 - cnv_pipe.batch.run_model.cluster702 - INFO - Child process finished cluster 702. Wrote cluster_702_samples.csv and cluster_702_params.csv
2026-06-03 05:32:53,350 - cnv_pipe.batch.run_model - INFO - Cluster 702 finished in 221.61 seconds. Status: SUCCESS