File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/63b277d02fff51e38c8e81b58d5131/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-34ju4x1p because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:25:53,001 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:25:53,780 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:25:53,951 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:26:34,092 - cnv_pipe.batch.run_model - INFO - Loaded data with 185 samples
2026-06-03 05:26:34,179 - cnv_pipe.batch.run_model - INFO - Processing cluster 102 with 182 probes
2026-06-03 05:26:34,548 - cnv_pipe.batch.run_model.cluster102 - INFO - Child process started for cluster 102 with 182 probes
2026-06-03 05:31:04,112 - cnv_pipe.batch.run_model.cluster102 - INFO - Child process finished cluster 102. Wrote cluster_102_samples.csv and cluster_102_params.csv
2026-06-03 05:31:04,114 - cnv_pipe.batch.run_model - INFO - Cluster 102 finished in 269.93 seconds. Status: SUCCESS