mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ccz1gkuw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:27:59,103 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:27:59,914 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:28:00,086 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:28:43,567 - cnv_pipe.batch.run_model - INFO - Loaded data with 185 samples
2026-06-03 05:28:43,784 - cnv_pipe.batch.run_model - INFO - Processing cluster 568 with 179 probes
2026-06-03 05:28:44,168 - cnv_pipe.batch.run_model.cluster568 - INFO - Child process started for cluster 568 with 179 probes
2026-06-03 05:33:48,901 - cnv_pipe.batch.run_model.cluster568 - INFO - Child process finished cluster 568. Wrote cluster_568_samples.csv and cluster_568_params.csv
2026-06-03 05:33:48,904 - cnv_pipe.batch.run_model - INFO - Cluster 568 finished in 305.12 seconds. Status: SUCCESS