mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-dfxshspm because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:25:43,399 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:25:44,176 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:25:44,345 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:26:25,187 - cnv_pipe.batch.run_model - INFO - Loaded data with 185 samples
2026-06-03 05:26:25,398 - cnv_pipe.batch.run_model - INFO - Processing cluster 65 with 159 probes
2026-06-03 05:26:25,772 - cnv_pipe.batch.run_model.cluster65 - INFO - Child process started for cluster 65 with 159 probes
2026-06-03 05:30:27,434 - cnv_pipe.batch.run_model.cluster65 - INFO - Child process finished cluster 65. Wrote cluster_65_samples.csv and cluster_65_params.csv
2026-06-03 05:30:27,436 - cnv_pipe.batch.run_model - INFO - Cluster 65 finished in 242.04 seconds. Status: SUCCESS