File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/c33e6d2ffb8ac09c33115929c2296c/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-fdqdxasy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:25:46,344 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:25:47,170 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:25:47,337 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:26:30,492 - cnv_pipe.batch.run_model - INFO - Loaded data with 185 samples
2026-06-03 05:26:30,709 - cnv_pipe.batch.run_model - INFO - Processing cluster 79 with 186 probes
2026-06-03 05:26:31,098 - cnv_pipe.batch.run_model.cluster79 - INFO - Child process started for cluster 79 with 186 probes
2026-06-03 05:31:09,126 - cnv_pipe.batch.run_model.cluster79 - INFO - Child process finished cluster 79. Wrote cluster_79_samples.csv and cluster_79_params.csv
2026-06-03 05:31:09,129 - cnv_pipe.batch.run_model - INFO - Cluster 79 finished in 278.42 seconds. Status: SUCCESS