.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (NA17119_c_01_gDNA_01_B23H3TCLT3_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/c9d63e1468a6b5c27e0198caa6fb3e/.command.sh
Size: 303 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (NA17119_c_01_gDNA_01_B23H3TCLT3_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    NA17119_c_01_gDNA_01_B23H3TCLT3_1 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    NA17119_c_01_gDNA_01_B23H3TCLT3_1_probe_sample.parquet