Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/d3f2ba928beab4f875cf9bd7d52c2c/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/b26917f770b7ab875879dcbaed161f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/b26917f770b7ab875879dcbaed161f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-zqlrqs5y because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:35:25,252 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:35:26,396 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:35:26,597 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:36:20,124 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:36:20,438 - cnv_pipe.batch.run_model - INFO - Processing cluster 1051 with 192 probes
2026-06-03 05:36:20,947 - cnv_pipe.batch.run_model.cluster1051 - INFO - Child process started for cluster 1051 with 192 probes
2026-06-03 05:42:06,744 - cnv_pipe.batch.run_model.cluster1051 - INFO - Child process finished cluster 1051. Wrote cluster_1051_samples.csv and cluster_1051_params.csv
2026-06-03 05:42:06,747 - cnv_pipe.batch.run_model - INFO - Cluster 1051 finished in 346.31 seconds. Status: SUCCESS