Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/d3f2ba928beab4f875cf9bd7d52c2c/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/d27832bba208b6c0e6058db4d62a2a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/d27832bba208b6c0e6058db4d62a2a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8dtiwnk2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:31:02,251 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:31:03,197 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:31:03,387 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:31:52,224 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:31:52,337 - cnv_pipe.batch.run_model - INFO - Processing cluster 80 with 195 probes
2026-06-03 05:31:52,986 - cnv_pipe.batch.run_model.cluster80 - INFO - Child process started for cluster 80 with 195 probes
2026-06-03 05:38:06,476 - cnv_pipe.batch.run_model.cluster80 - INFO - Child process finished cluster 80. Wrote cluster_80_samples.csv and cluster_80_params.csv
2026-06-03 05:38:06,480 - cnv_pipe.batch.run_model - INFO - Cluster 80 finished in 374.14 seconds. Status: SUCCESS