Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/d3f2ba928beab4f875cf9bd7d52c2c/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/5de7c42f3b9a5c747afa96837fba88/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/5de7c42f3b9a5c747afa96837fba88/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-nvse65cq because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:35:10,116 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:35:11,179 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:35:11,382 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:36:04,861 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:36:05,204 - cnv_pipe.batch.run_model - INFO - Processing cluster 982 with 177 probes
2026-06-03 05:36:05,716 - cnv_pipe.batch.run_model.cluster982 - INFO - Child process started for cluster 982 with 177 probes
2026-06-03 05:41:32,870 - cnv_pipe.batch.run_model.cluster982 - INFO - Child process finished cluster 982. Wrote cluster_982_samples.csv and cluster_982_params.csv
2026-06-03 05:41:32,872 - cnv_pipe.batch.run_model - INFO - Cluster 982 finished in 327.67 seconds. Status: SUCCESS