File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/2d48c150d2cb750bc46c5becc1370d/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9nbl911s because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:34:22,037 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:34:23,222 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:34:23,435 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:35:19,589 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:35:19,938 - cnv_pipe.batch.run_model - INFO - Processing cluster 804 with 184 probes
2026-06-03 05:35:20,495 - cnv_pipe.batch.run_model.cluster804 - INFO - Child process started for cluster 804 with 184 probes
2026-06-03 05:41:05,912 - cnv_pipe.batch.run_model.cluster804 - INFO - Child process finished cluster 804. Wrote cluster_804_samples.csv and cluster_804_params.csv
2026-06-03 05:41:05,915 - cnv_pipe.batch.run_model - INFO - Cluster 804 finished in 345.98 seconds. Status: SUCCESS