File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/6e346ef20d5e475a6f10f0d4d20e56/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-p923wr3z because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:34:03,106 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:34:04,132 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:34:04,325 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:34:56,433 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:34:56,560 - cnv_pipe.batch.run_model - INFO - Processing cluster 751 with 200 probes
2026-06-03 05:34:57,276 - cnv_pipe.batch.run_model.cluster751 - INFO - Child process started for cluster 751 with 200 probes
2026-06-03 05:40:51,890 - cnv_pipe.batch.run_model.cluster751 - INFO - Child process finished cluster 751. Wrote cluster_751_samples.csv and cluster_751_params.csv
2026-06-03 05:40:51,896 - cnv_pipe.batch.run_model - INFO - Cluster 751 finished in 355.34 seconds. Status: SUCCESS