Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/d3f2ba928beab4f875cf9bd7d52c2c/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/24fdf6289f24b576f2c568c44138e1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/24fdf6289f24b576f2c568c44138e1/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bdhw13n7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:35:04,836 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:35:05,731 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:35:05,915 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:35:53,418 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:35:53,599 - cnv_pipe.batch.run_model - INFO - Processing cluster 968 with 147 probes
2026-06-03 05:35:54,052 - cnv_pipe.batch.run_model.cluster968 - INFO - Child process started for cluster 968 with 147 probes
2026-06-03 05:39:35,321 - cnv_pipe.batch.run_model.cluster968 - INFO - Child process finished cluster 968. Wrote cluster_968_samples.csv and cluster_968_params.csv
2026-06-03 05:39:35,322 - cnv_pipe.batch.run_model - INFO - Cluster 968 finished in 221.72 seconds. Status: SUCCESS