.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (1136_4E9-N1-BDNA-1_A23H3NYLT3_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/84b8a8ee46b6f2a4842d7a1cec5091/.command.sh
Size: 299 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (1136_4E9-N1-BDNA-1_A23H3NYLT3_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    1136_4E9-N1-BDNA-1_A23H3NYLT3_1 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    1136_4E9-N1-BDNA-1_A23H3NYLT3_1_probe_sample.parquet