Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/d3f2ba928beab4f875cf9bd7d52c2c/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c5e205faa85e96f3060e831bbde3eb/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/6aa66e51b6d5acaae8cd1a623607cc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/6aa66e51b6d5acaae8cd1a623607cc/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-04ie_mjq because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:34:12,028 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:34:13,072 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:34:13,279 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:35:09,681 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:35:10,047 - cnv_pipe.batch.run_model - INFO - Processing cluster 772 with 195 probes
2026-06-03 05:35:10,579 - cnv_pipe.batch.run_model.cluster772 - INFO - Child process started for cluster 772 with 195 probes
2026-06-03 05:41:00,907 - cnv_pipe.batch.run_model.cluster772 - INFO - Child process finished cluster 772. Wrote cluster_772_samples.csv and cluster_772_params.csv
2026-06-03 05:41:00,909 - cnv_pipe.batch.run_model - INFO - Cluster 772 finished in 350.86 seconds. Status: SUCCESS