File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/d2dae5218a11e6f8945ce3e2291076/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-htlmyiwv because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:31:48,979 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:31:50,023 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:31:50,219 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:32:39,784 - cnv_pipe.batch.run_model - INFO - Loaded data with 190 samples
2026-06-03 05:32:40,103 - cnv_pipe.batch.run_model - INFO - Processing cluster 921 with 149 probes
2026-06-03 05:32:40,608 - cnv_pipe.batch.run_model.cluster921 - INFO - Child process started for cluster 921 with 149 probes
2026-06-03 05:37:21,266 - cnv_pipe.batch.run_model.cluster921 - INFO - Child process finished cluster 921. Wrote cluster_921_samples.csv and cluster_921_params.csv
2026-06-03 05:37:21,269 - cnv_pipe.batch.run_model - INFO - Cluster 921 finished in 281.17 seconds. Status: SUCCESS