File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/48aaa39baee6507b4d5257da9c45b5/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-k5w3cs_q because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:32:08,087 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:32:09,096 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:32:09,287 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:33:00,001 - cnv_pipe.batch.run_model - INFO - Loaded data with 190 samples
2026-06-03 05:33:00,349 - cnv_pipe.batch.run_model - INFO - Processing cluster 972 with 173 probes
2026-06-03 05:33:00,869 - cnv_pipe.batch.run_model.cluster972 - INFO - Child process started for cluster 972 with 173 probes
2026-06-03 05:38:34,235 - cnv_pipe.batch.run_model.cluster972 - INFO - Child process finished cluster 972. Wrote cluster_972_samples.csv and cluster_972_params.csv
2026-06-03 05:38:34,238 - cnv_pipe.batch.run_model - INFO - Cluster 972 finished in 333.89 seconds. Status: SUCCESS