File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/4b51b89f1c5a548346eae41267b518/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-2t75vau3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:32:30,167 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:32:31,155 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:32:31,340 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:33:23,981 - cnv_pipe.batch.run_model - INFO - Loaded data with 190 samples
2026-06-03 05:33:24,299 - cnv_pipe.batch.run_model - INFO - Processing cluster 1044 with 186 probes
2026-06-03 05:33:24,833 - cnv_pipe.batch.run_model.cluster1044 - INFO - Child process started for cluster 1044 with 186 probes
2026-06-03 05:39:22,794 - cnv_pipe.batch.run_model.cluster1044 - INFO - Child process finished cluster 1044. Wrote cluster_1044_samples.csv and cluster_1044_params.csv
2026-06-03 05:39:22,797 - cnv_pipe.batch.run_model - INFO - Cluster 1044 finished in 358.50 seconds. Status: SUCCESS