File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/083136ba0c32b24f8efff64f38976a/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-iizhfvn9 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:32:12,525 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:32:13,580 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:32:13,778 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:33:07,646 - cnv_pipe.batch.run_model - INFO - Loaded data with 190 samples
2026-06-03 05:33:08,018 - cnv_pipe.batch.run_model - INFO - Processing cluster 980 with 195 probes
2026-06-03 05:33:08,533 - cnv_pipe.batch.run_model.cluster980 - INFO - Child process started for cluster 980 with 195 probes
2026-06-03 05:39:02,562 - cnv_pipe.batch.run_model.cluster980 - INFO - Child process finished cluster 980. Wrote cluster_980_samples.csv and cluster_980_params.csv
2026-06-03 05:39:02,564 - cnv_pipe.batch.run_model - INFO - Cluster 980 finished in 354.55 seconds. Status: SUCCESS