#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    NA09596_c_0001_gDNA_0001_B23H3Y2LT3_1 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    NA09596_c_0001_gDNA_0001_B23H3Y2LT3_1_probe_sample.parquet