File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/4e0bf64d53d4e70f713d5490c20511/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_ol8y1ws because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:31:16,208 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:31:17,232 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:31:17,423 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:32:09,562 - cnv_pipe.batch.run_model - INFO - Loaded data with 190 samples
2026-06-03 05:32:09,875 - cnv_pipe.batch.run_model - INFO - Processing cluster 815 with 193 probes
2026-06-03 05:32:10,356 - cnv_pipe.batch.run_model.cluster815 - INFO - Child process started for cluster 815 with 193 probes
2026-06-03 05:38:10,145 - cnv_pipe.batch.run_model.cluster815 - INFO - Child process finished cluster 815. Wrote cluster_815_samples.csv and cluster_815_params.csv
2026-06-03 05:38:10,148 - cnv_pipe.batch.run_model - INFO - Cluster 815 finished in 360.27 seconds. Status: SUCCESS