Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/a824105a000bd4102efd8aadd86274/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/a824105a000bd4102efd8aadd86274/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/b41f3d5e56a31b4a017a00332debe8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/a824105a000bd4102efd8aadd86274/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/b06fdb8431bf3ad7b76e06a6c011b1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/b06fdb8431bf3ad7b76e06a6c011b1/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9jrviou3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:30:53,868 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:30:54,823 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:30:55,005 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:31:47,276 - cnv_pipe.batch.run_model - INFO - Loaded data with 190 samples
2026-06-03 05:31:47,598 - cnv_pipe.batch.run_model - INFO - Processing cluster 738 with 167 probes
2026-06-03 05:31:48,056 - cnv_pipe.batch.run_model.cluster738 - INFO - Child process started for cluster 738 with 167 probes
2026-06-03 05:37:21,686 - cnv_pipe.batch.run_model.cluster738 - INFO - Child process finished cluster 738. Wrote cluster_738_samples.csv and cluster_738_params.csv
2026-06-03 05:37:21,689 - cnv_pipe.batch.run_model - INFO - Cluster 738 finished in 334.09 seconds. Status: SUCCESS