File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/e744512c25fd86322d9d76da3e527e/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7egb_tw7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:32:51,223 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:32:52,289 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:32:52,479 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:33:45,025 - cnv_pipe.batch.run_model - INFO - Loaded data with 190 samples
2026-06-03 05:33:45,363 - cnv_pipe.batch.run_model - INFO - Processing cluster 1111 with 181 probes
2026-06-03 05:33:45,857 - cnv_pipe.batch.run_model.cluster1111 - INFO - Child process started for cluster 1111 with 181 probes
2026-06-03 05:39:26,538 - cnv_pipe.batch.run_model.cluster1111 - INFO - Child process finished cluster 1111. Wrote cluster_1111_samples.csv and cluster_1111_params.csv
2026-06-03 05:39:26,542 - cnv_pipe.batch.run_model - INFO - Cluster 1111 finished in 341.18 seconds. Status: SUCCESS