Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/327f035bf8fc6fbcf2fa0d952a6c14/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/9cd2439877072719bd8cbefcdf1fcc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/9cd2439877072719bd8cbefcdf1fcc/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-i9h16d_c because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:39:28,470 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:39:29,548 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:39:29,774 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:40:24,861 - cnv_pipe.batch.run_model - INFO - Loaded data with 182 samples
2026-06-03 05:40:24,979 - cnv_pipe.batch.run_model - INFO - Processing cluster 1095 with 195 probes
2026-06-03 05:40:25,703 - cnv_pipe.batch.run_model.cluster1095 - INFO - Child process started for cluster 1095 with 195 probes
2026-06-03 05:46:12,729 - cnv_pipe.batch.run_model.cluster1095 - INFO - Child process finished cluster 1095. Wrote cluster_1095_samples.csv and cluster_1095_params.csv
2026-06-03 05:46:12,732 - cnv_pipe.batch.run_model - INFO - Cluster 1095 finished in 347.75 seconds. Status: SUCCESS