mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rpkhskun because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:38:19,720 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:38:20,842 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:38:21,123 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:39:13,681 - cnv_pipe.batch.run_model - INFO - Loaded data with 182 samples
2026-06-03 05:39:13,933 - cnv_pipe.batch.run_model - INFO - Processing cluster 625 with 187 probes
2026-06-03 05:39:14,420 - cnv_pipe.batch.run_model.cluster625 - INFO - Child process started for cluster 625 with 187 probes
2026-06-03 05:46:43,091 - cnv_pipe.batch.run_model.cluster625 - INFO - Child process finished cluster 625. Wrote cluster_625_samples.csv and cluster_625_params.csv
2026-06-03 05:46:43,095 - cnv_pipe.batch.run_model - INFO - Cluster 625 finished in 449.16 seconds. Status: SUCCESS