Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/327f035bf8fc6fbcf2fa0d952a6c14/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/b3f54e94a8107457af92eb4cc262f3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/b3f54e94a8107457af92eb4cc262f3/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-xb7ttmjh because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:38:46,628 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:38:47,528 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:38:47,700 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:39:30,059 - cnv_pipe.batch.run_model - INFO - Loaded data with 182 samples
2026-06-03 05:39:30,283 - cnv_pipe.batch.run_model - INFO - Processing cluster 925 with 183 probes
2026-06-03 05:39:30,683 - cnv_pipe.batch.run_model.cluster925 - INFO - Child process started for cluster 925 with 183 probes
2026-06-03 05:44:31,959 - cnv_pipe.batch.run_model.cluster925 - INFO - Child process finished cluster 925. Wrote cluster_925_samples.csv and cluster_925_params.csv
2026-06-03 05:44:31,961 - cnv_pipe.batch.run_model - INFO - Cluster 925 finished in 301.68 seconds. Status: SUCCESS