Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/327f035bf8fc6fbcf2fa0d952a6c14/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/c419da3841901676b70243b06716eb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/c419da3841901676b70243b06716eb/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9h6wca17 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:39:46,711 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:39:47,813 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:39:48,018 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:40:40,934 - cnv_pipe.batch.run_model - INFO - Loaded data with 182 samples
2026-06-03 05:40:41,222 - cnv_pipe.batch.run_model - INFO - Processing cluster 1175 with 158 probes
2026-06-03 05:40:41,675 - cnv_pipe.batch.run_model.cluster1175 - INFO - Child process started for cluster 1175 with 158 probes
2026-06-03 05:45:19,770 - cnv_pipe.batch.run_model.cluster1175 - INFO - Child process finished cluster 1175. Wrote cluster_1175_samples.csv and cluster_1175_params.csv
2026-06-03 05:45:19,772 - cnv_pipe.batch.run_model - INFO - Cluster 1175 finished in 278.55 seconds. Status: SUCCESS