File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/687cff25396961ba07083d728863b1/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-aj7q8jxi because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:38:01,811 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:38:03,019 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:38:03,243 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:38:58,103 - cnv_pipe.batch.run_model - INFO - Loaded data with 182 samples
2026-06-03 05:38:58,411 - cnv_pipe.batch.run_model - INFO - Processing cluster 748 with 191 probes
2026-06-03 05:38:58,947 - cnv_pipe.batch.run_model.cluster748 - INFO - Child process started for cluster 748 with 191 probes
2026-06-03 05:44:32,624 - cnv_pipe.batch.run_model.cluster748 - INFO - Child process finished cluster 748. Wrote cluster_748_samples.csv and cluster_748_params.csv
2026-06-03 05:44:32,627 - cnv_pipe.batch.run_model - INFO - Cluster 748 finished in 334.22 seconds. Status: SUCCESS