Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/327f035bf8fc6fbcf2fa0d952a6c14/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9133afffd640c1c36c35f2745858a5/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/a11d561d69728b533d85f027e5e219/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/a11d561d69728b533d85f027e5e219/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7grtqrpw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:39:06,726 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:39:07,645 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:39:07,829 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:39:56,763 - cnv_pipe.batch.run_model - INFO - Loaded data with 182 samples
2026-06-03 05:39:57,126 - cnv_pipe.batch.run_model - INFO - Processing cluster 1010 with 196 probes
2026-06-03 05:39:57,646 - cnv_pipe.batch.run_model.cluster1010 - INFO - Child process started for cluster 1010 with 196 probes
2026-06-03 05:45:43,643 - cnv_pipe.batch.run_model.cluster1010 - INFO - Child process finished cluster 1010. Wrote cluster_1010_samples.csv and cluster_1010_params.csv
2026-06-03 05:45:43,646 - cnv_pipe.batch.run_model - INFO - Cluster 1010 finished in 346.52 seconds. Status: SUCCESS