mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-sywck37a because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:39:06,764 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:39:07,890 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:39:08,091 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:40:00,315 - cnv_pipe.batch.run_model - INFO - Loaded data with 182 samples
2026-06-03 05:40:00,680 - cnv_pipe.batch.run_model - INFO - Processing cluster 1000 with 101 probes
2026-06-03 05:40:01,166 - cnv_pipe.batch.run_model.cluster1000 - INFO - Child process started for cluster 1000 with 101 probes
2026-06-03 05:43:29,221 - cnv_pipe.batch.run_model.cluster1000 - INFO - Child process finished cluster 1000. Wrote cluster_1000_samples.csv and cluster_1000_params.csv
2026-06-03 05:43:29,223 - cnv_pipe.batch.run_model - INFO - Cluster 1000 finished in 208.54 seconds. Status: SUCCESS