Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/0736553abd3f1ae6189c25cf0a2077/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8940e298004d5cefac289b95ebb498/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/6caa38b411dcca17a029b6b61016c5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/6caa38b411dcca17a029b6b61016c5/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-tpbfoqti because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:04:56,712 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:04:57,526 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:04:57,695 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:13,940 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:14,155 - cnv_pipe.batch.run_model - INFO - Processing cluster 989 with 179 probes
2026-06-03 05:05:14,546 - cnv_pipe.batch.run_model.cluster989 - INFO - Child process started for cluster 989 with 179 probes
2026-06-03 05:08:41,155 - cnv_pipe.batch.run_model.cluster989 - INFO - Child process finished cluster 989. Wrote cluster_989_samples.csv and cluster_989_params.csv
2026-06-03 05:08:41,157 - cnv_pipe.batch.run_model - INFO - Cluster 989 finished in 207.00 seconds. Status: SUCCESS