mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-4ml_doxy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:03:06,708 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:03:07,880 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:03:08,131 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:03:31,876 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:03:32,155 - cnv_pipe.batch.run_model - INFO - Processing cluster 556 with 187 probes
2026-06-03 05:03:32,771 - cnv_pipe.batch.run_model.cluster556 - INFO - Child process started for cluster 556 with 187 probes
2026-06-03 05:07:28,648 - cnv_pipe.batch.run_model.cluster556 - INFO - Child process finished cluster 556. Wrote cluster_556_samples.csv and cluster_556_params.csv
2026-06-03 05:07:28,651 - cnv_pipe.batch.run_model - INFO - Cluster 556 finished in 236.50 seconds. Status: SUCCESS