File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/ce3d67c49b0ce4a669a42567a9b946/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gz98lc_d because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:05:01,146 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:05:01,931 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:05:02,100 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:05:18,339 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:05:18,552 - cnv_pipe.batch.run_model - INFO - Processing cluster 1123 with 184 probes
2026-06-03 05:05:18,928 - cnv_pipe.batch.run_model.cluster1123 - INFO - Child process started for cluster 1123 with 184 probes
2026-06-03 05:08:45,755 - cnv_pipe.batch.run_model.cluster1123 - INFO - Child process finished cluster 1123. Wrote cluster_1123_samples.csv and cluster_1123_params.csv
2026-06-03 05:08:45,758 - cnv_pipe.batch.run_model - INFO - Cluster 1123 finished in 207.21 seconds. Status: SUCCESS